Cells and Instruments, but no Folsom Prison Blues

Brian Wuertz, Warren Wilson College

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In my previous post, “Hiding in plain sight”, I introduced DOSS, a compound that has been recently identified as a probable obesogen. We are especially concerned about the potential of this compound to cause obesity symptoms in developing children through exposure from their mothers. While DOSS is in many products we use daily, such as homogenized milk and makeup products, it is commonly prescribed to pregnant women in the form of Colace stool softener. I am investigating both how much DOSS is in certain places in the body and how it may promote obesity.

One of the main concerns about obesity is that it elevates the risk of developing other diseases such as diabetes or cancer by causing a state of chronic inflammation (Bianchini 2002).  Chronic inflammation in  adipose tissue is regulated by immune cells, including macrophages. Macrophages are immune cells found throughout the body that help to fight against infection by recognizing invading bacteria and engulfing them in a process called phagocytosis, literally meaning to eat the other cells. In addition to phagocytosis macrophages are important regulators of the larger inflammatory response by secreting proteins that tell other cells to initiate or maintain a state of inflammation (Fujiwara 2005). This inflammatory reaction may be induced by DOSS. We have seen evidence of increased inflammation and obesity in mice treated with DOSS, so in order to figure out what causes that I am focusing on macrophages because of the way they regulate inflammation.

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I am isolating macrophages from breast milk samples under this hood in a sterile environment to make sure they are not contaminated with bacteria.

One way to study the inflammatory response of macrophages is to expose them to DOSS and then see if they produce the inflammatory proteins. Instead of trying to measure the secreted proteins, we can measure how much RNA is made in the cell. The RNA is the translator molecule that takes the plan for the protein from the DNA and makes it available for the cell to read and make the right protein. I identified genes for four different inflammatory proteins to measure the RNA so we can test if DOSS causes the macrophages to make more of any of them. I am testing macrophages that I am isolating from human placenta and breast milk tissue because the developing child is influenced by inflammation in the placenta and breast milk. Macrophages in these tissues could be the source of inflammation that influences how the child develops.

Okay so we have talked about cells, but what about the instruments? In my last post I introduced my instrument of choice, but did not call it that. It is not a guitar or a saxophone, but the HPLC, or high performance liquid chromatograph. This is simply a fancy instrument used to separate chemical compounds by forcing them through a tiny filter column filled with tiny beads. Some compounds stick more to the beads than others, so when you flow a liquid through the column the compounds come out of the column at different times. It is essential to separate the compounds in a sample because then you can measure the amounts of individual compounds.

We want to know where DOSS goes in the body, so we need to be able to measure how much of it is in a sample. I am working to get a system up and running to measure the amounts of DOSS in samples from different cells and tissues. We want to be able to measure DOSS in humans and in marine mammals such as dolphins. Dolphins are exposed to DOSS in the COREXIT oil spill dispersal agent that is applied to large and small scale oil spill issues along coastlines and in harbors. Dolphins are an important sentinel species, meaning that they can provide insight into human health issues.

I have to prepare a column and get the right mixture of solvents to make DOSS come off of the column in a timely fashion and in a way that we can measure it. The measurement is actually done with a mass spectrometer, which measures allows us to identify the compound based on how much it weighs. The number of atoms and types of atoms in the compound determine the mass of the compound. This mass is how the instrument measures the compound. The technique I am using is therefore called liquid chromatography mass spectrometry or LC-MS and the instrument is also referred to by LC-MS. Hopefully by the end of the summer I will be able to find beautiful data with this instrument that will make a coherent tune rather than a jumble of notes.

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This is the MS part. It measures the mass of the compound and then breaks it apart and measures the mass of the pieces of the compounds and the amount of the compounds.

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This is the LC or liquid chromatography part of the LC-MS instrument. Most of the work is figuring out the best solvent system to the sample through the small column with the red tag on it.

Funding for this REU program is generously provided by the National Science Foundation and hosted by the College of Charleston. Dr Demetri Spyropoulos at the Medical University of South Carolina is graciously hosting my research project and providing mentorship.

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References:

Bianchini, F., Kaaks, R., and Vainio, H. (2002). Overweight, obesity, and cancer risk. The Lancet Oncology 3, 565–574.
Fujiwara, N., and Kobayashi, K. (2005). Macrophages in Inflammation. Current Drug Target -Inflammation & Allergy 4, 281–286.

Hiding in plain sight

Brian Wuertz, Warren Wilson College

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How much do we really know about all the chemicals that we are exposed to every day? Do we even know when we come into contact with them? How much do we know about what is in homogenized milk, soda, stool softeners, baby formula, and personal care products such as eyeliner? The answer may be “not enough” for one compound found in all of those products, dioctyl sodium sulfosuccinate, or DOSS. DOSS has recently been identified by my mentor, Dr. Spyropoulos and his Ph.D. student, Alexis Temkin, as a probable obesogen. Obesogens are a class of compounds that promote obesity by interfering with the body’s hormone signalling pathways related to energy use, fat cell regulation, and inflammation. These pathways are especially important in the developing fetus, where hormone signals influence development and may have long lasting effects on the health of the child after birth (Holder 2016).

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I am working on a High Performance Liquid Chromatography  (HPLC) system, in the early stages of developing a method to measure the amount of DOSS in cell extracts. (More to come in future posts!)

We are especially concerned with regards to the developing fetus and child because stool softeners containing DOSS are are commonly taken by pregnant women. Approximately 35% of over 20,000 women who gave birth at MUSC in recent years reported taking a stool softener containing DOSS during their pregnancy. I am working to help understand the biochemical pathways DOSS may follow to affect changes in the  developing fetus through a mother’s exposure to DOSS. I am also working on a method to measure the amount of DOSS in cells so that we can learn where in the body DOSS goes and how much of it there actually is.

You might be wondering how this fits into the theme of marine organism health at this point since all I have talked about is human health and a compound found in products we put in our bodies, DOSS. A red flag was raised about DOSS through research on COREXIT, one of the agents used to clean up the Deepwater Horizon oil spill. Over 40 million gallons of COREXIT was dumped into the ocean as a part of the cleanup effort and DOSS is one of the major components (Temkin 2016).  DOSS was flagged as a potential human health hazard because of the research done on marine environmental degradation. It amazes me how a perhaps seemingly unrelated topic can end up having human health implications. I am excited to keep working on this puzzle to learn more about DOSS and how it interacts with the systems in our bodies!

Funding for this REU program is generously provided by the National Science Foundation and hosted by the College of Charleston. Dr Demetri Spyropoulos at the Medical University of South Carolina is graciously hosting my research project and providing mentorship.

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Sources:

Holder, B., Jones, T., Sancho Shimizu, V., Rice, T.F., Donaldson, B., Bouqueau, M., Forbes, K., and Kampmann, B. (2016). Macrophage Exosomes Induce Placental Inflammatory Cytokines: A Novel Mode of Maternal–Placental Messaging. Traffic 17, 168–178.
Temkin, A.M., Bowers, R.R., Magaletta, M.E., Holshouser, S., Maggi, A., Ciana, P., Guillette, L.J., Bowden, J.A., Kucklick, J.R., Baatz, J.E., et al. (2016). Effects of Crude Oil/Dispersant Mixture and Dispersant Components on PPARγ Activity in Vitro and in Vivo: Identification of Dioctyl Sodium Sulfosuccinate (DOSS; CAS #577-11-7) as a Probable Obesogen. Environ Health Perspect 124, 112–119.

 

 

 

Expect the Unexpected in Science

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Alessandra Jimenez, Whitworth University

As this internship has recently come to an end, I now begin to reflect on the wonderful yet challenging experience I had conducting observational research on Atlantic brown shrimp (Farfantepenaeus aztecus). In the last few weeks of this 10-week summer program, there was a fascinating yet unexpected turn of events. In particular, results of the experiment pointed to conclusions that I initially found myself unprepared for!

In summary, the focus of this experiment was to test effects of immune response on the ability to escape predators in shrimp. The escape mechanism, called tail-flipping (see video below) is actually powered anaerobically. However, recovery from this energetic behavior absolutely requires oxygen (is aerobic). As further explained in previous blog posts (click here and here), a recently discovered consequence of mounting an immune response against bacterial infection involves depression of aerobic metabolism. So, my mentor and I decided to focus on the recovery aspect (aerobic) of the escape response and predicted that this aerobic process would be impaired in shrimp injected with bacteria. At the same time, we predicted that the anaerobic part of this mechanism would be significantly impacted.

A slow-motion video of an Atlantic brown shrimp juvenile tail-flipping in an experimental tank (c) Alessandra Jimenez

The last few weeks of the internship mainly consisted of analysis, arriving at conclusions, and publicly reporting results. After testing tail-flipping ability (click here for an explanation of how this was tested) in a total of 42 shrimp juveniles, 30 of these were chosen for final analysis. Using a statistics software called Sigmaplot (version 12.5), I conducted tests that basically compared experimental groups based on the two variables I investigated: treatment type (bacteria or saline) and time given after injection (4 or 24 hours). Afterwards, results were deemed important based on significance values assigned by these Sigmaplot tests.

Significant results were very surprising!  Overall, results suggested that metabolic depression (indirectly caused by the immune response) did not have an impact on recovery (aerobic). At the same time, the most unexpected finding of all suggested that bacterial exposure actually increased anaerobic tail-flipping activity in Atlantic brown shrimp juveniles! Thus, this result called for a complete change in focus from the aerobic part to the anaerobic part of this particular escape response.

So, how could I possibly explain the increase in anaerobic processes found through this experiment? After much pondering and going through scientific literature, I formulated a new hypothesis. An important enzyme in crustaceans called arginine kinase is involved in the storage and creation of anaerobic energy that can be used for tail-flipping. Recent studies involved injecting bacteria into live crustacean tissue and comparing arginine kinase expression levels with controls. Results indicated a significant increase in expression in bacteria-injected tissue, especially in abdominal muscle (important for tail-flipping!). Based on these investigations, I now think that there may be a link between immune response and levels of anaerobic metabolism. Further research is required to explore this.

The final stages of the internship included creating and presenting a Powerpoint presentation of our work, and submitting a manuscript of my summer investigation. Overall, this REU internship experience has been challenging yet exciting, and has confirmed my love for marine biological research. As I mentioned at the end of my presentation, “expect the unexpected in science”.

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Picture of me right before giving my Powerpoint presentation (c) Alessandra Jimenez

References:

Burnett, L. E., Holman, J. D., Jorgensen, D. D., Ikerd, J. L., & Burnett, K. G. (2006). Immune defense reduces respiratory fitness in Callinectes sapidus, the Atlantic blue crab. Biological Bulletin, 211(1), 50-57.

Gruschczyk, B., Kamp, G., 1990. The shift from glycogenolysis to glycogen resynthesis after escape swimming: studies on the abdominal muscle of the shrimp, Crangon crangon. J Comp Physiol B, 753-760.

Scholnick, D. A., Burnett, K. G., & Burnett, L. E. (2006). Impact of exposure to bacteria on metabolism in the penaeid shrimp Litopenaeus vannamei. Biological Bulletin, 211(1), 44-49.

Yao, C., Ji, P., Kong, P., Wang, Z., Xiang, J., 2009. Arginine kinase from Litopenaeus vannemai: Cloning, expression, and catalytic properties. Fish Shellfish Immunol 26, 553-558.

Many thanks to College of Charleston for hosting my project, Dr. Karen Burnett and Hollings Marine Laboratory for guidance and work space, and NSF for funding the REU program.

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What’s living in the sand?

Jessie Lowry, Coker College

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Visible microalgae seen on the surface of wet sand at Folly Beach.

Next time you go to the beach this summer, I want you to think about the sand that you are walking on. Did you know that there are tons of microscopic photosynthetic organisms, aka microalgae, that live on the surface of sand? Before this summer, I didn’t know about these organisms either. Here is a picture of visible microalgae on the surface of the sand. Look for this next time you’re at the beach!

Microalgae communities in sand are made up of single-celled eukaryotic algae and cyanobacteria living in the top several millimeters of the sand (Miller et al., 1996). These organisms play important roles in ecosystem productivity and food chain dynamics, as well as in sediment properties, such as erodibility (Miller et al., 1996).

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Dr. Craig Plante and Jessie Lowry collect samples of sediment from Folly Beach. Photo credit: Kristy Hill-Spanik.

I am studying these microalgal communities and what factors influence community structure. For example, does pH, salinity, nutrients, or grain size shape microalgal community structure? Or does geographic distance shape communities? To answer these questions, I am collecting samples from Kiawah Island, Folly Beach, Isle of Palms, and Pawley’s Island, SC. We are measuring environmental variables at each location, and using molecular tools to study microalgal community structure.

I am extracting the DNA from samples collected, amplifying specific regions from these samples using polymerase chain reaction (PCR), and then we will be getting these regions sequenced using Ion Torrent technology. We will then use QIIME to determine how similar these benthic microalgal communities are.

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Jessie Lowry preparing samples for PCR, or polymerase chain reaction, which is used to make millions of copies of a piece of DNA.

Diatoms, a group of microalgae, have been proposed as bioindicators of environmental health (Desrosiers et al., 2013). Bioindicators are really cool because instead of telling a snapshot of an environmental condition, such as pH, temperature, or amount of oxygen in an environment, biological indicators reflect those changes and can give an idea of how the ecosystem is being affected. This research will further our knowledge of what factors shape benthic microalgal communities, and give a better understanding of these organisms as a potential bioindicator. In addition, this research will add to knowledge about the distribution of microorganisms, which is also not fully understood.

Learn more:

http://web.vims.edu/bio/shallowwater/benthic_community/benthic_microalgae.html

http://www.aims.gov.au/docs/research/water-quality/runoff/bioindicators.html

References

Desrosiers, C., Leflaive, J., Eulin, A., Ten-Hage, L. (2013). Bioindicators in marine waters: benthic diatoms as a tool to assess water quality from eutrophic to oligotrophic coastal ecosystems. Ecological Indicators, 32, 25-34.

Miller, D.C., Geider, R.J., MacIntyre, H.L. Microphytobethos: The ecological role of the “Secret Garden” of unvegetated, shallow-water marine habitats. Estuaries, 19(2A): 186-212.

Acknowledgements

Thank you so much to my mentors Dr. Craig Plante, and Kristy Hill-Spanik. This research is funded through the National Science Foundation and College of Charleston’s Grice Marine Lab.

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A day in the Shrimp Lab

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Alessandra Jimenez, Whitworth University

Have you ever wondered what it’s like to be a lab researcher who works with live animals? Through this internship, I am experiencing this firsthand in Hollings Marine Laboratory, along with all the responsibilities involved!

A normal workday in the life of a “shrimp intern” is like this: A big part of it is animal care and maintenance. It starts in the morning with a daily visit to the wet lab, where approximately 80 brown shrimp juveniles are kept in four large tanks with circulating water. After feeding them a round of commercial shrimp pellets, I test the salinity of the water in each tank using a refractometer to make sure that each tank has a certain salinity value: 30 parts per thousand, to be exact. I use dechlorinated freshwater and seawater to adjust this value if needed. Besides salinity, I also need to watch out for harmful levels of ammonia (it’s a part of shrimp waste!), nitrates, etc. In usual circumstances, I conduct a water change (replacing old water with new) once a week in order to dilute these chemicals. For the past couple of weeks, however, I have been conducting water changes daily in order to keep ammonia levels neutral in three tanks. Ah, the life of a caretaker of tons of baby shrimp!

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Wet lab. @AlessandraJimenez

Besides animal husbandry, I work on my experiment involving the effects of injection of bacteria on tail flipping (Want to learn more about what I’m doing? click here). I have two shrimp at a time in separate, well-aerated tanks, and they are both from the same treatment group. Shrimp are randomly assigned to one of four treatment groups. These treatment groups are designated according to the treatment type (injection of bacteria or saline) and according to the amount of time between the moment of injection and the tail-flipping procedure (4 or 24 hours). I randomly select two shrimps from the wet lab, weigh them, and keep them in the two experimental tanks overnight so they can get used to the new environment, temperature, etc. The next day, I take each shrimp out of the tank momentarily and quickly inject them with bacteria, or a saline buffer if they are part of the control group. Then, I give them 4 or 24 hours (depending on group type) to rest before conducting the actual tail-flipping experiment. Using a stir-rod (basically, a straight stick), I poke the shrimp lightly to induce tail-flipping, and count how many flips they perform before fatigue. The number of flips here is called ‘initial activity’. Then, I give them 20 minutes to recover in the tank before tail-flipping them again. The number of flips this time is called ‘recovery activity’.

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Experimental tanks @AlessandraJimenez

Why tail-flip them twice? Well, we hypothesize that recovery activity will be impaired in bacteria-injected shrimp versus the controls, while initial activity would probably not be. This is based on how recovery from tail-flipping activities involves aerobic (or oxygen-fueled) metabolism. Since bacteria accumulate in the gills of shrimp and block oxygen uptake (want to learn more? click here), it would make sense that recovery activity would be reduced. Stay tuned for results later on!

Works Cited:

Gruschczyk, B., Kamp, G., 1990. The shift from glycogenolysis to glycogen resynthesis after escape swimming: studies on the abdominal muscle of the shrimp, Crangon crangon. J Comp Physiol B, 753-760.

Scholnick, D. A., Burnett, K. G., & Burnett, L. E. (2006). Impact of exposure to bacteria on metabolism in the penaeid shrimp Litopenaeus vannamei. Biological Bulletin, 211(1), 44-49.

Many thanks to College of Charleston for hosting my project, Dr. Karen Burnett and Hollings Marine Laboratory for guidance and work space, and NSF for funding the REU program.

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Making Renewable Energy An Even Cheaper Alternative!

Yoel Cortes-Pena, Georgia Institute of Technology

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Fig 1. Picture of me

I’m Yoel Cortes-Pena, a chemical engineering senior student at Georgia Tech and future scientist and entrepreneur.  My research interests lie in renewable energy and environmental sustainability. Additionally, although I am an engineering student during the day, I am also part of Hip-Hop culture at night. My hobbies include dancing, beatboxing and rapping. Here is a link to my channel. 

Through this blog, I want to share with you my research experience as part of the Fort Johnson Undergraduate Summer Research Program. When I received the acceptance letter, I was surprised and happy that I would be working with Dr. Harold May in Microbial Electrosynthesis. This new technology uses microbes to fix carbon dioxide and electrons from an electrode to produce fuels and highly valued chemicals such as hydrogen, methane and acetate.

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Fig 2.Picture of Microbial Electrosynthesis Reactor. The graphite rod on the left is the cathode (electron donor) and the rod on the right is the anode (electron acceptor). The left side of the reactor is being sparged with CO2. The microbes, located on the left side of the reactor, are fixing the CO2 and producing hydrogen (visible bubbles) and acetate (dissolved in solution).

One of the many applications of microbial electrosynthesis includes the storage of energy without contributing to carbon emissions. Solar, wind and other renewable energy forms output a variable amount of energy that tends to exceed public demand, especially during off-peak hours. Consequently, this surplus electricity becomes stranded energy that cannot be used. Microbial Electrosynthesis can utilize this excess or stranded energy and store it in fuel, valorizing the use of renewable energy technology.

Acknowledgements

Dr. Harold May’s Enviromental Microbiology lab is affiliated to the Medical University of South Carolina (MUSC).This project is possible thanks to funding from the NSF College of Charleston Summer REU program and the Grice Marine Laboratory. Lab space and facilities are provided by the Hollings Marine Laboratory.

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Are New Englanders more tolerant than Southerners? A test of latitudinal variation in Atlantic sea urchins

Kaelyn* Lemon, Macalester College/ Dr. Bob Podolsky and Grice Marine Lab

If you’re not a climate change denier, you know that global climate change, mainly driven by the increasing amounts of carbon dioxide that humans release into the atmosphere, has been raising the Earth’s average temperature and will continue to do so for the near future. If you are particularly well-versed in your environmental science, you know that these increasing amounts of carbon dioxide are also causing the oceans of the world to become more acidic (see: coral bleaching) (1). Unless you are a marine or climate scientist, though, you probably don’t know why climate change is causing ocean acidification or how this will affect ocean animals besides probably not being the best thing ever for them.

Our oceans actually absorb around 30% of the carbon dioxide we release into the air (2). This CO2 hangs around as a gas mixed into the water and goes through a series of chemical reactions that both release hydrogen ions (the H in pH), therefore lowering the pH of the water and making it more acidic, and reducing the amount of carbonate available in the water for ocean animals and other organisms to use (2). Animals like sea urchins that build shells or skeletons out of calcium carbonate (the main ingredient in limestone) find this task more difficult when there is less carbonate around.

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Ocean acidification due to greater amounts of carbon dioxide in the atmosphere leads to less carbonate in the water (from http://www.i-fink.com/ocean-acidification/)

While the thought of sea urchins will bring to mind their hard, spiny exterior, these animals (yes, there are body tissues inside those aquatic pincushions) are actually most affected by ocean acidification during their larval stage of life, when they build a skeleton that allows them to swim around and eat (3) (urchin larvae are like insect larvae in that they behave and look very different from the full-grown animals they will eventually become). When oceans become more acidic and less carbonate is available, urchin larvae are smaller, which makes it harder for them to eat at the same time as they are more at risk of being eaten themselves (3). Unfortunately, a world with a lot fewer urchins would be a world where seaweed would easily overgrow ocean habitats and predators of urchins (like the adorable fuzzy otters that lay on their backs in the ocean and hold hands- google it) might have more difficulty finding food.

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One of the sea urchins from South Carolina with some of the seaweed they like to eat (photo credit: Kaelyn  Lemon)

I’m looking into whether sea urchins (specifically the species Arbacia puntulata, which is found in the Atlantic ocean) from Massachusetts and South Carolina will react differently in higher acidity. If one group of urchins can produce larvae that maintain a larger body size under more acidic conditions than the other group, then we will know that there is some degree of variability within the species. This would be a positive result for the sea urchins (and therefore for oceans in general) because it would mean that these urchins may be able to adapt to acidified waters more easily than we can currently expect.

Sources:

1. IPCC, 2014: Climate Change 2014: Synthesis Report. Contribution of Working Groups I, II and III to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Core Writing Team, R.K. Pachauri and L.A. Meyer (eds.)]. IPCC, Geneva, Switzerland, 151 pp.

2. Clark D, Lamare M, Barker M. 2009. Response of sea urchin pluteus larvae (Echinodermata: Echinoidea) to reduced seawater pH: a comparison among a tropical, temperate, and a polar species. Marine Biology. 156: 1125-1137.

3. Sheppard Brennand H, Soars N, Dworjanyn SA, Davis AR, Byrne M. 2010. Impact of ocean warming and ocean acidification on larval development and calcification in the sea urchin Tripneustes gratilla. PloS One. 5:1-7.

Funding from the NSF and support from the College of Charleston

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